How to publish research in peer-reviewed journals

By Ren Ryba @ 2023-11-23T06:51 (+86)


This is a guide to publishing research in peer-reviewed journals, particularly for people in the EA community who might be keen to publish research but haven't done so before.

About this article:

Should you publish your work in a peer-reviewed journal?

Edit: There is also some discussion on this decision in a recent forum article here, and that article's comments too, as well as here.

Advantages of publishing in peer-reviewed journals

Drawbacks of publishing in peer-reviewed journals

How peer-reviewed papers differ from EA Forum articles

How I think about publishing

Types of journals

A quick Google tells me that there are around 30,000 to 50,000 peer-reviewed journals currently in existence. The database Journal Citation Reports lists over 21,000 journals. Even once you narrow this down to journals that would accept a particular paper, you still might be looking at hundreds or even thousands of journals that you could plausibly target. Here is one way to think about the different journals out there - this is just how I think about journals, and this is not a comprehensive or exhaustive system. Note that the first four categories overlap.

Top-tier journals

Firstly, there are the really swanky, top-tier journals. These are highly prestigious. Think NatureScience, and Proceedings of the National Academy of Sciences (PNAS). These typically have Impact Factors of above ~10, and sometimes above 30. Those three journals publish articles across a variety of disciplines, but there are also many top-tier journals that are specific to certain fields.

High-tier and mid-tier journals.

Secondly, there are high-tier and mid-tier journals. These are the standard, bread-and-butter journals, where most academics will publish most of their work - they are perfectly respectable places to publish. Depending on the discipline, these may have Impact Factors between 0.5 and ~10. In biology, this might include Global Change BiologyMarine BiologyFisheries Research, and Journal of Experimental Marine Biology and Ecology. In economics, this might include Environmental and Resource Economics or Journal of Labor Economics.

Low-tier journals

On the less prestigious end are low-tier journals, which usually have an Impact Factor below 1. These can be perfectly rigorous journals, but are often focused on a very specific region (e.g. Journal of the Adelaide Botanic GardensIcelandic Review of Politics & Administration) or a very specific topic (e.g. American Malacological Bulletin). These can be a good place to publish if you a) care about your work being published, b) do not care about the reach of your paper or prestige of your journal, and c) have already tried a few high- and mid-tier journals.

Open-access mega journals

Open-access mega journals are a relatively recent phenomenon. These journals tend to have some unusual characteristics: they publish very large numbers of papers; they often don't care about the novelty of a paper, but will accept the paper as long as it is rigorous and passes peer review; and they charge the author a fee for publishing (6). They'll only really reject if the work is actually low-quality or unscientific. But the trade-off is that they do charge quite large fees for publication (from a few hundred to a few thousand dollars, depending on the journal and the type of article). You may be able to apply for a fee waiver or discount if you're from a developing country and/or if you do not belong to a university or institution. Often, a single publisher owns a large number of these journals.

Major examples include the publishers Frontiers (e.g. Frontiers in Psychology), MDPI (e.g. Animals), and other journals like PeerJ and PLOS ONE. Note that open-access mega journals do conduct rigorous peer review and are therefore not predatory journals (see below). I quite like these journals, and they tend to be open-minded, but I wouldn't exclusively rely on them - some academics are wary of publishing only in open-access mega journals, and it is not always possible to fork out $2,000 or more for a publication fee.

Journals that work differently

There are a few interesting journals that I want to flag here. F10000 Research is an open-access mega journal that publishes before peer review - then, peer review comments are made public, and the authors can adopt the comments into a revised paper that is published in place of the old one (though this journal charges publication fees). Journal of Controversial Ideas is notable for allowing anonymous publication. Depending on the field, there are also some journals that explicitly invite replication studies or null results.

Places to publish your research that are not journals

Depending on your motivations for publishing, there are places you can publish your work that aren't actually peer-reviewed journals, but share some characteristics of journals. For example, see The Unjournal. I'd include the EA Forum in this category. I'd also include pre-prints, but I'll discuss these more later in this article (see below).

Student journals

There are some journals, often affiliated with specific universities, that specifically publish papers from undergraduate students or graduate students. I'd usually stay away from these. While these journals are typically rigorous, they also tend to have low prestige and small audiences. I think most papers that are publishable in student journals are also publishable in mainstream journals.

Predatory journals

Unfortunately, there are many predatory journals out there. These journals either don't conduct peer review, or conduct a minimal peer review as a simple formality. These journals often charge for publication. If you look online, you can find many lists of predatory journals and predatory publishers, and there are guides to help you evaluate if a journal is predatory (e.g. Beall's List). Stay far, far away from these.

 


Types of papers

There are a number of different types of papers that can be written and submitted to journals. Not all journals accept all of these types, and different journals have different definitions - make sure you check the "instructions to authors" page of the journal.

Choosing journals to target

Edit 23rd March 2024: I've just found JournalGuide and SciRev which seem like useful databases of journals that let you filter by discipline and then sort by both impact factor and publication speed. Seem like really useful tools for picking journals.

These are the main considerations when considering journals:

There are some strategies:

Coauthors

Steps for writing and submitting a paper

Your guidebook is the "instructions for authors" or "guidelines for submission" page of the journal, which you can find on the website of any journal. That page is the single most important document to read, understand, and follow to the letter. Pay close attention to it, and do exactly what it says.

Writing the paper

Parts of a journal submission

When you submit a paper, you also need to submit a bunch of other stuff:

Author name

If it's your first submission, you'll need to figure out which name you want to publish under. Typically, this will be your full name. I'd encourage you to add your middle initial, or even your full middle name if your name is common. The idea is to have as many individual unique letters in your name as possible, to avoid being confused with other researchers in the future - it does happen.

Also consider if you're planning to change your name in the future, perhaps for marriage, gender affirmation, or religious reasons. It is possible to change your name on a published paper, but it's just a bit of extra bureaucracy that's best to avoid if possible.

Pre-submission enquiry

Some journals use pre-submission enquiries, and don't allow journal submissions unless you've already sparked the editor's interest with a pre-submission enquiry. This is basically an email, addressed to a particular editor, pitching your idea. This is very similar to a cover letter. Pre-submission enquiries are more common in swanky journals (e.g. NatureScience) or review articles in high-tier journals.

Submission portal

Basically all journals use a submission portal to manage the submission process. You get to the submission process by clicking the big shiny "Submit a paper" or "Submissions" button on the journal website. You'll usually need to register for an account, and some journals require you to enter an ORCID (ORCIDs take ten seconds to make if you don't have one).

The portal will have a very structured way to submit your paper. You'll need to upload all your files in the right spots, in the right way. You'll also need to enter a bunch of information about your paper (e.g. your name, coauthor names, title, abstract, word count, number of figures and tables). 

Some journals allow, or even require, you to recommend peer reviewers. Other journals forbid this. The point of recommending reviewers is to save the editors time, as authors typically have the best idea of who the experts in their discipline are. Editors will not always use your suggested reviewers, but they often will. Some authors will specifically choose reviewers who are likely to look on their work favourably (e.g. if the reviewer shares a philosophical view or theoretical perspective with the author). You cannot recommend reviewers if you have recently worked with them or if they belong to the same university/institution as you.

Do not communicate with the journal outside of the submission portal, unless you've been specifically asked to do so. Editors are highly time-stressed, and this will mostly annoy them. Keep communications to essential information within the portal, and keep any communications brief.

After submission

Possible outcomes

After you've submitted a paper to a journal, there are four main outcomes:

Timelines

The time it takes to publish a paper strongly depends on the journal and the discipline. Many journals list their median publication times on their website. It is common to take a journal a few days or weeks to either desk reject or send the paper to peer review, and it is common for peer review to take several months. After a paper is accepted, it might take a few weeks to be published on the journal's website, though it might be uploaded as an unformatted manuscript to the journal's website in the meantime.

Addressing peer review comments (revise and resubmit)

A top-notch guide is the paper by Sullivan et al (7), which gives step-by-step advice for responding to peer review comments. Follow their advice. I would emphasise their key points:

You might not agree with all of the comments. It is common for peer review comments to be silly or even nasty. As Peterson (8) writes: "Dear Reviewer 2: Go F’ Yourself". Nevertheless, if you want your revised paper to be accepted by that journal, you must take all of the comments on board and adopt them all, to the best of your ability. In the case of misunderstanding, adopting a comment might not mean doing exactly what the comment says, but rather figuring out why the reviewer might have become confused and then clarifying your manuscript to avoid that misunderstanding. In practice, I've found it's usually safe to respectfully disagree with 1 comment for every 10 or 20 comments that I do adopt without complaint. (In the case of actual abuse or discrimination by the reviewers, which sadly does happen, things are different - see the below section on discrimination.)

Addressing peer review comments (reject after review)

If your paper is rejected after peer review, meaning you need to submit your paper to a new journal, then you don't have such a strong need to adopt the comments from that peer review. However, it can be good to consider the comments and adopt the comments that seem valid, major, and/or easy. This can stop you from tripping up over the same problems with the next journal.

Proofs (after acceptance)

After your paper is accepted, the journal will typically send you proofs - this is the formatted paper, in line with the journal's style. You'll get a link to an online portal, where you can correct any formatting/visual mistakes and respond to any questions from the typesetter and production staff.

When to quit

If you come to see your paper as genuinely flawed, faulty, or non-rigorous, then it is ok to quit and not worry about publishing it. Try not to confuse this with thinking that your paper is flawed because a peer reviewer said so.


Emotional challenges

Rejection resilience

Rejection is ubiquitous. Every academic on the planet routinely experiences rejection (9). It really sucks to have your work rejected. Whenever I check my emails and see that a journal has sent me a rejection letter, it stings. My cheeks burn and my stomach drops. I've learned to accept this feeling more quickly as I've developed as a researcher, and I'm less averse to rejection since I've developed lots of experience.

My view is that to publish papers, the most important skill to cultivate is "rejection resilience" (4). If you persist, and your work is at least half-decent (i.e. it is rigorous, it engages with the existing literature, and it is not downright fraudulent), then the chance that your work will eventually get published is high.

A satirical, but validating, perspective on rejection is provided by Han et al (10), who describe "ManuScript Rejection sYndrome (MiSeRY)": "Manuscripts associated with high pre-submission expectations and sent for external review were associated with increased MiSeRY when rejected. This was especially true for first authors, who are not only more personally invested in the reported research but must also bear the burden of re-formatting the manuscript for the next submission. Further, we hypothesise that senior authors, who have undoubtedly encountered MiSeRY during their formative research years, may have developed enhanced Coping and reLaxing Mechanisms (CaLM) that guard against a potential state of permanent MiSeRY."

I think Han et al demonstrate a great mindset for publishing. As they write: "We acknowledge the various medical journals that have rejected our manuscripts and provided inspiration for this study. To quote a contemporary poet: 'thank u, next'."

One particular complication that I've experienced due to rejection is email anxiety. As Gill (11) writes, "'Addiction' metaphors suffuse academics’ talk of their relationship to e-mail, even as they report such high levels of anxiety that they feel they have to check e-mail first thing in the morning and last thing at night, and in which time away (on sick leave, on holiday) generates fears of what might be lurking in the inbox when they return." In my own case, this has been exacerbated by previous experiences and psychological challenges (including trauma and abuse during my childhood and adolescence). Developing emotional intelligence, self-understanding, and mindfulness, as well as understanding what my core values are, have been really useful in learning to manage this anxiety (probably good life advice in general, if somewhat inane!).

Reviewer comments can be nasty

It's no secret that peer reviewers can sometimes be really mean (12). While many peer reviewers are helpful and encouraging, others can be downright nasty (often partially because they have experienced hurtful criticism or other injuries from academia themselves).

Gill (11) reports receiving this reviewer comment: "This paper will be of no interest to readers of x (journal name). Discourse analysis is little more than journalism and I fail to see what contribution it can make to un- derstanding the political process. It is self evident to everyone except this author that politics is about much more than 'discourse'. What’s more, in choosing to look at the speeches of Margaret Thatcher, the author shows his or her complete parochialism. If you are going to do this kind of so-called 'analysis' at least look at the discourse of George Bush." 

Gill also tells us how she responded: "I laughed (bitterly) at the accusation of parochialism from this particular North American journal, and even more at the suggestion that this would be put right by focusing on the US (!). But that was small comfort because mostly I felt belittled, hurt and upset at this dismissive rejection of work that I had thought about, developed and crafted over months of careful scholarship. Maybe I wasn’t 'good enough' for academia. I had felt optimistic and proud to have written my first 'proper' academic paper. Eight months later when the rejection letter came, disheartened, I could not bear to look at it again. It remained unpublished and some years passed before I submitted another paper to a journal."

Burnout and discrimination

Burnout is common among academics. The publication system has contributed to this (9).

Since reviewers are human, comments can even be straight-up sexist, racist, transphobic, ableist, and/or offensive in other ways (13,14). There's a discussion of this here. Depending on context, some journals and universities have complaints policies (though I'd be skeptical about their value).

Tips

Suggested reading

The Lean PhD by Julian Kirchherr

Books on academic writing style

References

1. Kharasch ED, Avram MJ, Clark JD, Davidson AJ, Houle TT, Levy JH, et al. Peer Review Matters: Research Quality and the Public Trust. Anesthesiology. 2021 Jan 1;134(1):1–6.

2. Salinas S, Munch SB. Where should I send it? Optimizing the submission decision process. PLoS One. 2015 Jan 23;10(1):e0115451.

3. Calcagno V, Demoinet E, Gollner K, Guidi L, Ruths D, de Mazancourt C. Flows of research manuscripts among scientific journals reveal hidden submission patterns. Science. 2012 Nov 23;338(6110):1065–9.

4. Allen KA, Freese RL, Pitt MB. Rejection Resilience—Quantifying Faculty Experience With Submitting Papers Multiple Times After a Rejection. Acad Pediatr [Internet]. 2022; Available from: https://www.academicpedsjnl.net/article/S1876-2859(21)00649-5/abstract

5. Bornmann L, Mutz R, Daniel HD. A reliability-generalization study of journal peer reviews: a multilevel meta-analysis of inter-rater reliability and its determinants. PLoS One. 2010 Dec 14;5(12):e14331.

6. Spezi V, Wakeling S, Pinfield S, Creaser C, Fry J, Willett P. Open-access mega-journals: The future of scholarly communication or academic dumping ground? A review. Journal of Documentation. 2017 Jan 1;73(2):263–83.

7. Sullivan GM, Simpson D, Yarris LM, Artino AR Jr. Writing Author Response Letters That Get Editors to “Yes.” J Grad Med Educ. 2019 Apr;11(2):119–23.

8. Peterson DAM. Dear reviewer 2: Go F’ yourself. Soc Sci Q. 2020 Jul;101(4):1648–52.

9. Jaremka LM, Ackerman JM, Gawronski B, Rule NO, Sweeny K, Tropp LR, et al. Common Academic Experiences No One Talks About: Repeated Rejection, Impostor Syndrome, and Burnout. Perspect Psychol Sci. 2020 May;15(3):519–43.

10. Han HC, Koshy AN, Lin T, Yudi M, Clark D, Teh AW, et al. Predictors of ManuScript Rejection sYndrome (MiSeRY): a cohort study. Med J Aust. 2019 Dec;211(11):511–3.

11. Gill R. 17 Breaking the silence: The hidden injuries of the neoliberal university. In: Secrecy and silence in the research process. Routledge; 2013. p. 228–44.

12. Mavrogenis AF, Quaile A, Scarlat MM. The good, the bad and the rude peer-review. Int Orthop. 2020 Mar;44(3):413–5.

13. Strauss D, Gran-Ruaz S, Osman M, Williams MT, Faber SC. Racism and censorship in the editorial and peer review process. Front Psychol. 2023 May 19;14:1120938.

14. Cochran A. Gender Discrimination in Peer Review [Internet]. 2016. Available from: http://dx.doi.org/10.31235/osf.io/d2kz9


Preview image by JJ Ying (@jjying) on Unsplash


titotal @ 2023-11-23T09:34 (+14)

As another published academic, I'll add another downside and another upside:

My downside is that the tone of academic articles tends to incredibly dry. Humour and conversational tone are not unheard of, but are generally frowned upon, and it can make papers a bummer to read and write. Casual audiences will be less likely to read your work as a result. To remedy this, it might be worth doing a summary post of your work that is more accessible to general audiences. 

My upside is that peer review really forces you to engage with the existing literature on a subject. Yes, this is often time consuming and painful (which is why most people wouldn't do it otherwise), but it a) forces you to back up your claims, and b) forces you to check what's actually been done before. EA (and especially Rationalists) can have a bad habit of not invented here syndrome,  reinventing the wheel when very smart people have already spent years working on a subject. 

It gets paid back as well: next time an academic is looking at the same subject, they are forced to consider your research and perspective, and may add or expand on it in a way you never thought to do. 

david_reinstein @ 2023-11-24T03:52 (+6)

Just a quick note as The Unjournal was mentioned. We commission expert peer review and rating (and pay the evaluators) and all evaluation is made public. We focus on potentially-impactful work in economics, social science, and policy. We are aiming at a standard and metrics that will be comparable and can be benchmarked against the traditional journal tiers, as well as ratings and adding value on other dimensions.

Submitting your work to The Unjournal basically does not preclude you from also submitting it to anywhere else. We don't 'publish' your work or claim ownership of it; you need to have it made available publicly (in an archive, working paper series, etc., we can advise on this if you like). We simply evaluate it. 

Anyways, this is all stated better in our 'nutshell explanation', and our 'why should authors engage' and on our page (unjournal.org), which has an enabled chatbot you can use to ask it questions. 

SummaryBot @ 2023-11-23T12:39 (+5)

Executive summary: This comprehensive guide provides advice on publishing research in peer-reviewed journals, particularly for newer researchers, covering decision-making, types of journals and papers, writing and submission steps, addressing reviews, and managing rejection.

Key points:

  1. Consider whether publishing in journals fits your goals before investing significant time; key tradeoffs are credibility and reach versus effort and delays.
  2. Many journal types exist; target those matching your paper style, scope, fees, impact, and audience.
  3. Parts of journal submissions include the manuscript, figures, cover letter, data availability statement, and more.
  4. Persist through likely rejection; address all reviewer comments thoroughly.
  5. Manage anxiety and hurtful comments; most face frequent rejection and occasional nastiness.
  6. Use reference managers and check journal preprint policies.

 

This comment was auto-generated by the EA Forum Team. Feel free to point out issues with this summary by replying to the comment, and contact us if you have feedback.

PeterSlattery @ 2023-11-24T20:30 (+4)

Thank you for this, Ren! I really appreciate it.

One tip I would suggest is to consider trying to find template(s) to follow for any new research project. That is, try to find one or more papers which address the same topic and/or use the same method as your paper, before you start on the paper. The best case is if the templates are published in the journal/outlet you are targeting. 

When you have templates, use them to guide and simplify the production of your paper. For instance, this might be by closely following the method, structure, style of diagrams, sections or paragraphs etc in the template. Or by rewriting an existing but similar section (e.g., the abstract or conclusion) rather than starting one from scratch. 

Often you can basically reuse arguments and references. For instance, if you are trying to claim that Animal welfare is important in context x, and a published paper has a paragraph arguing for that, then you can often just rework that paragraph and cite the same references rather than spend time trying to find your own references and construct new arguments etc.

You also reduce a lot of risk by building on something that was accepted after a lot of revision and work, rather than trying to implement your naïve best attempt at what would be acceptable etc.

Jasmin Kaur @ 2023-12-06T15:46 (+3)

Found this really helpful- thanks for sharing Ren, along with great summary tips!

Catherine Harries @ 2023-12-04T22:22 (+3)

Thank you for sharing this!

Niklas Lehmann @ 2023-11-24T12:39 (+3)

Thanks Ren for this in-depth article. This is pure gold! Btw: I happened to read something related a couple of days ago: why-you-should-publish-your-research-in-academic-fashion. Maybe you should ask the author to link to your post?

Also: You have written "paper" instead of "journal" on the first line of your subsection Open access mega journals.

 

Ren Springlea @ 2023-11-24T20:16 (+5)

Thank you, fixed.

I did search for related articles on the EA Forum before posting mine, but I missed that one. The irony!! I'll add a link to that post in this article.

Corentin Biteau @ 2024-01-16T10:58 (+1)

Thanks, very good article ! This might prove helpful in the future, who knows.